How to Pay KRA Penalties After Missing the Deadline

The Kenya Times ~ Trending, Breaking News and Videos How to Pay KRA Penalties After Missing the Deadline The Kenya Revenue Authority (KRA) requires all taxpayers to file their tax returns by June 30 every year. However, missing this deadline comes with consequences, as KRA automatically charges penalties and interest on late returns or unpaid taxes. Clearing tax penalties is not optional. Failure to do so locks you out of vital services such […] This post How to Pay KRA Penalties After Missing the Deadline first appeared on The Kenya Times ~ Trending, Breaking News and Videos and is written by Annah Nanjala Wekesa

How to Pay KRA Penalties After Missing the Deadline

The Kenya Times ~ Trending, Breaking News and Videos

How to Pay KRA Penalties After Missing the Deadline

The Kenya Revenue Authority (KRA) requires all taxpayers to file their tax returns by June 30 every year. However, missing this deadline comes with consequences, as KRA automatically charges penalties and interest on late returns or unpaid taxes.

Clearing tax penalties is not optional. Failure to do so locks you out of vital services such as obtaining a tax compliance certificate, which is often required for job applications, tenders, or government services.

Offences and Penalties

KRA imposes strict fines for tax offences. Below are some of the common offences and their penalties:

Offence Penalty
Late filing of Pay-As-You-Earn (PAYE) 25% of the tax due or Ksh 10,000, whichever is higher
Late payment of PAYE tax 5% of the tax due + 1% interest per month
Failure to deduct Withholding VAT / Withholding Rental Income Tax 10% of the tax is involved
Late payment of Withholding Tax (Income, VAT, Rental) 5% of the tax due
Late filing of Monthly Rental Income (MRI)Returns Individuals: 5% of tax due or Ksh 2,000 (whichever is higher)
Non-Individuals: 5% of tax due or Ksh. 20,000 (whichever is higher)
Late payment of MRI 5% of the tax due + 1% interest per month
Late payment of Stamp Duty 5% of the duty payable
Late filing of Excise Duty Return 5% of tax due or Ksh 10,000, whichever is higher
Late payment of Excise Duty Tax 5% of the tax due + 1% interest per month
Late filing of VAT Return 5% of the tax due or Ksh 10,000, whichever is higher
Late payment of VAT tax 5% of the tax due + 1% interest per month
Late filing of Income Tax (Company/Partnership Returns) 5% of the tax due or Ksh 20,000, whichever is higher
Late payment of Income Tax for Non-Individuals 5% of the tax due + 1% interest per month
KRA PIN-related offences Ksh 2,000 per offence

Also Read: How Kenyans Can Apply for a Refund from KRA After Paying Excess Tax


How to Pay KRA Penalties

KRA has made it easier for taxpayers to clear penalties through the iTax portal, mobile money, or banks.

Step 1: Log in to iTax

  • Visit iTax.
  • Enter your KRA PIN, password, and answer the security question.

Step 2: Generate a Payment Slip (PRN)

  • On the iTax homepage, go to Payments → Payment Registration.
  • Select the tax head (Income Tax, VAT, PAYE, etc.).
  • Under sub-head, choose Penalty & Interest.
  • Fill in the relevant tax period.
  • Submit and generate a Payment Registration Number (PRN).
  • Download and print the payment slip.

Also Read: KRA Scraps Manual Tax Return Filing for Employed Kenyans


Step 3: Make the Payment

KRA advises taxpayers to use the PRN as the account number when paying. You can pay via mobile money (M-Pesa) using PayBill number 222222:

  1. Enter PayBill number: 222222.
  2. Account number: Enter the PRN.
  3. Amount: As indicated on the PRN.
  4. Enter your M-Pesa PIN and send.

Alternatively, dial *222#, select “Pay KRA Bill,” enter the PRN, choose M-Pesa, and complete the process.

Step 4: Confirm Payment

  • Log back into iTax.
  • Go to Payment → Consult Payment Status.
  • Enter your PRN to verify if the penalty has been cleared.

For assistance, taxpayers can contact KRA via 020-4-999-999, 0711-099-999, or email callcentre@kra.go.ke

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KRA Commissioner General Humphrey Wattanga speaking at a past event.
KRA Commissioner General Humphrey Wattanga speaking at a past event. PHOTO/KRA.ax

This post How to Pay KRA Penalties After Missing the Deadline first appeared on The Kenya Times ~ Trending, Breaking News and Videos and is written by Annah Nanjala Wekesa

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